_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-21
 Query name: gi|1042301059|ref|XP_017346835.1| PREDICTED: 15 kDa selenoprotein [Ictalurus punctatus]
 Query range: 1-153  (total 153)

 Target: /data/www-rg/seblastian_results/489190304/tempfiles/temptarget.fasta
 Chromosome: OMLM01002590.1:subseq_77859,87303_ Strand: +
 Positions:
 -Exon 1  49049        49096
 -Exon 2  50003        50170
 -Exon 3  53644        53707
 -Exon 4  54099        54148
 -Exon 5  54283        54411

 Redox box: no

Query   MAAEVYLLWLLPLLQS <---Intron---> LAAFGAELSSEACRELGFSSNLLCSSCDLLGQFSLSPIEPFCRQCCQEEAQLESRK <---Intron-
        |/ |||| ||/ |||/ <   906bp    > |/|/| |||||||||||||||||||||||||/|||/ //| || |||/|||/|/|| <   3473bp 
Target  MSGEVYLFWLISLLQT                LSAYGTELSSEACRELGFSSNLLCSSCDLLGEFSLNKLQPDCRHCCQQEAQMEARK            
        atgggtcttcatctca                ctgtgagcttggtagtgttaacctattgccggtacaacccgtccttccggcaggca            
        tcgatattgttcttac                tccagcatccacggatgtcgattggcgattgatgtaatacaggaggaaacatacga            
        ggaggtccgctttaag                gggctcgggagacggggccccggccttcgtggccccgtgcccacccgggcggaccg            
                                                                                                            

Query   --> LYPGAILEVCGUKLGRFPQVQA <---Intron---> FVRSDKPKMFKGLQIK <---Intron---> YVRGSDPVLKLLDDNGNIAEELSILK
          > || ||||||||||||||||||| <   391bp    > |||||||||||||||| <   134bp    > ||||||||||||||||||||||||||
Target      LYAGAILEVCGUKLGRFPQVQA                FVRSDKPKMFKGLQIK                YVRGSDPVLKLLDDNGNIAEELSILK
            ctgggacggtgtacgatccgcg                tgaagacaatagccaa                tgagtgcgcactggagaagggcaaca
            tacgcttatgggatggtcata                cttggaacattagtata                atggcacttattaaagatcaatgtta
            cctacccggtaaagggctaca                ttcgtcgaggcgttgcg                tgacattaagtgctcgcctaaccccg
                       *                                                                                    

Query   WNTDSVEEFLSEKLDRI
        |||||||||||||||||
Target  WNTDSVEEFLSEKLDRI
        taagagggtcagatgca
        gacagtaattgaatagt
        gcgccgggcatgaatga
                         
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 710 ; UGA-SECIS: 917

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = OMLM01002590.1:subseq_77859,87303_ Strand = + Positions = 55122 - 55197
 Found by:  Infernal (score=42.43) Covels (score=35.42)
 Stem2 length = 11   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -23.34

         ..(((((((.......(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ..((((((((......{[[(((((((((([(.....--........)]))))))))))]]}.....-..))))))))..
 target  CUGAGACACACGUUAGUGAAGGCCUCACAGUAAACC--ACUGUUGGGAUGUGAGGUCUGAUGUAUA-UUUGUGUUUCUC
                         ****           ^^^                       ****